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The Nucleic Acid Knowledgebase (NAKB) is a portal for 3D structural information about nucleic acids, succeeding the Nucleic Acid Database. It provides annotations, search, reports, statistics, an atlas and visualization for nucleic-acid containing structures held by the NDB and the Protein Data Bank, covering X-ray, electron microscopy and NMR methods. Each structure links to external resources annotating and analyzing nucleic acid structures and their complexes.
BMRB is a data bank that collects, annotates, archives, and disseminates spectral and quantitative data from NMR spectroscopic investigations of biological macromolecules and metabolites. The project states that it makes bio-NMR data FAIR: findable, accessible, interoperable, and reusable. It covers proteins, nucleic acids, carbohydrates, and organics.
The Ligand-Gated Ion Channel Database holds nucleic and proteic sequences of ligand-gated ion channel subunits, one entry per gene, manually constructed and checked. It offers multiple sequence alignments, some phylogenetic studies, and atomic coordinates when available. Development began in 1994 and the resource is now officially frozen; the data and links remain but it is not actively maintained or considered up to date.
NMRshiftDB is an open web database for organic structures and their nuclear magnetic resonance (NMR) spectra. It supports spectrum prediction for nuclei including 13C and 1H, as well as searching for spectra, structures and related properties. The open source platform hosts fully assigned spectra with raw data and peak lists, which are peer reviewed by a dedicated board, with data published under an open content license.
The World Data Center for Aerosols is the data repository and archive for atmospheric aerosol microphysical, optical, and chemical property data, operated as part of the World Meteorological Organisation’s Global Atmosphere Watch programme. The centre supports long-term aerosol measurements to detect trends in global air chemical constituent distributions, with a focus on characterising the spatio-temporal distribution of aerosol properties related to climate forcing and air quality across regional, hemispheric, and global scales over multi-decadal time periods. It curates core long-term aerosol observation parameters including particle number concentration, size distribution, mass concentration, and cloud condensation nuclei concentration.
The Worldwide Protein Data Bank (wwPDB) is the organization that manages the Protein Data Bank archive, the single global repository of three-dimensional structural data for proteins, nucleic acids, and complex assemblies, which has operated since 1971. The wwPDB maintains the archive and provides resources including validation tools, deposition systems, data dictionaries, and policies for the structural biology community.