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wiki.hydrogenaudio.org
Hydrogenaudio Knowledgebase is an audio or music resource for streaming, discovery, editing, production, or library management.
nakb.org
The Nucleic Acid Knowledgebase (NAKB) is a portal for 3D structural information about nucleic acids, succeeding the Nucleic Acid Database. It provides annotations, search, reports, statistics, an atlas and visualization for nucleic-acid containing structures held by the NDB and the Protein Data Bank, covering X-ray, electron microscopy and NMR methods. Each structure links to external resources annotating and analyzing nucleic acid structures and their complexes.
compsysbio.org
Bacteriome.org is a database integrating physical protein-protein and functional interactions within an E. coli knowledgebase. It offers a functional interaction network derived from genomic datasets using a Bayesian framework, a core network of high-quality experimentally derived protein-protein interactions, and an extended network including less strongly supported interactions. Users can search by gene name, protein domain or functional category.
bigg.ucsd.edu
BiGG Models is a knowledgebase of genome-scale metabolic network reconstructions that integrates more than 70 published networks into a single database with standardized BiGG IDs. It can be browsed on the website or accessed using a web API. It is hosted and maintained by the Systems Biology Research Group at the University of California, San Diego.
geneontology.org
The Gene Ontology project is a bioinformatics initiative developing a computational representation of knowledge about how genes encode biological functions. Its knowledgebase provides human-readable and machine-readable information on gene functions, intended as a foundation for computational analysis of molecular biology and genetics experiments. The resource also offers ontology browsing, annotation downloads, GO-CAM models, and tools with API access.
github.com
A robust, all-in-one GPT interface for Discord. ChatGPT-style conversations, image generation, AI-moderation, custom indexes/knowledgebase, youtube summarizer, and more!
kbase.us
KBase is the Department of Energy Systems Biology Knowledgebase, a software and data science platform for systems biology. It is intended for bench biologists and bioinformaticians, offering digital notebooks called Narratives for shareable, reproducible workflows with data, visualizations and commentary.
signalingpathways.org
Signaling Pathways Project is a multi-omics knowledgebase for mammalian cellular signaling pathways that succeeded NURSA. It integrates transcriptomic and ChIP-Seq datasets, with preserved NURSA-curated transcriptomic data available for mining through Ominer. The datasets page lists transcriptomic and cistromics datasets, filterable by pathway module, biosample, species and release date. The notice about NURSA's retirement also mentions a planned hypothesis generation environment on dkNET.
topfind.clip.msl.ubc.ca
TopFIND is a public knowledgebase focused on protein termini and protease processing. It lists natural and neo N- and C- termini and protease cleavage sites across multiple covered organisms, integrates protein termini and function data with proteolytic processing, alternative transcription and translation information, and includes analysis tools TopFINDer and PathFINDer for proteomics-derived data sets.
web.expasy.org
UniProtKB/Swiss-Prot is the manually annotated and reviewed section of the UniProt Knowledgebase. It is a non-redundant protein sequence database that brings together experimental results, computed features and scientific conclusions. Since 2002 it has been maintained by the UniProt consortium and is accessible via the UniProt website.
pureportal.strath.ac.uk
Dataset repository covering chemistry, with searchable datasets.
virhostnet.prabi.fr
VirHostNet is a bioinformatic information system for biocuration, data integration, analysis and visualisation of virus/host protein-protein interactions. It offers quick search by protein accession, keyword, taxonomy or PMID, BLAST protein sequence search, browsing by viral taxonomy and keyword annotations, and an Interology web service. The knowledgebase is shared in PSI MITAB 2.5 format via the PSICQUIC web service and distributed through NDEx.